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command-line-based tool  (SourceForge net)

 
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    SourceForge net command-line-based tool
    Command Line Based Tool, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/command+line+tools/command+line+based+tool/us12297428-844-12-14
    Average 90 stars, based on 1 article reviews
    command-line-based tool - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Software:

    Article Title: HIPPIE: Integrating Protein Interaction Networks with Experiment Based Quality Scores
    Article Snippet: .. For this we provide a Java command line tool (available from http://cbdm.mdc-berlin.de/tools/hippie and also deposited at the SourceForge open software archive: https://sourceforge.net/projects/hippiecbdm ) that will do the computation on the local machine of the user for large input sets or neighbours of neighbours. ..

    other:

    Article Title: The histone variant H2A.Z is an important regulator of enhancer activity
    Article Snippet: The Picard command-line tools (version 1.64, http://picard.sourceforge.net) was then used to remove duplicates (above ∼80% of the filtered data were kept).

    Article Title: The histone variant H2A.Z is an important regulator of enhancer activity
    Article Snippet: MNase ChIP-seq data were downsampled using Picard command-line tools (http://picard.sourceforge.net), by sub-sampling total reads from 10 to 100% (in increments of 10%).

    Article Title: Linking in silico MS/MS spectra with chemistry data to improve identification of unknowns
    Article Snippet: MS/MS spectra were predicted using competitive fragmentation modelling (CFM) and the open command line tools developed by Allen et al . , , and named CFM-ID (available here: http://sourceforge.net/projects/cfm-id ).

    Article Title: A New Algorithm for Integrated Analysis of miRNA-mRNA Interactions Based on Individual Classification Reveals Insights into Bladder Cancer
    Article Snippet: An implementation of our algorithm as package of command-line tools is available at http://sourceforge.net/projects/caperna .



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